1WVA Hydrolase date Dec 14, 2004
title Crystal Structure Of Human Arginase I From Twinned Crystal
authors L.Di Costanzo, G.Sabio, A.Mora, P.C.Rodriguez, A.C.Ochoa, F.Cente D.W.Christianson
compound source
Molecule: Arginase 1
Chain: A, B
Synonym: Arginase I, Liver-Type Arginase
Ec: 3.5.3.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11-D
symmetry Space Group: P 3
R_factor 0.150 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.602 90.602 69.311 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.94 Å
ligand MN, S2C enzyme Hydrolase E.C.3.5.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human arginase I at 1.29-A resolution and exploration of inhibition in the immune response., Di Costanzo L, Sabio G, Mora A, Rodriguez PC, Ochoa AC, Centeno F, Christianson DW, Proc Natl Acad Sci U S A 2005 Sep 13;102(37):13058-63. Epub 2005 Sep 2. PMID:16141327
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1wva.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (1wva.pdb2.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 1WVA
  • CSU: Contacts of Structural Units for 1WVA
  • Likely Quarternary Molecular Structure file(s) for 1WVA
  • Structure Factors (752 Kb)
  • Retrieve 1WVA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WVA from S2C, [Save to disk]
  • Re-refined 1wva structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WVA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WVA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WVA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wva] [1wva_B] [1wva_A]
  • SWISS-PROT database: [P05089]
  • Domain organization of [ARGI1_HUMAN] by SWISSPFAM
  • Other resources with information on 1WVA
  • Community annotation for 1WVA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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