1WVG	Lyase	date	Dec 15, 2004
title	Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella T
authors	N.M.Koropatkin, H.M.Holden
compound		source
Molecule: Cdp-Glucose 4,6-Dehydratase Chain: A, B Ec: 4.2.1.45 Engineered: Yes		Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhi; Organism_taxid: 220341 Strain: Ct18 Gene: Ddhb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21a
symmetry	Space Group: P 31 2 1	R_factor 0.201 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.900 93.900 152.800 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	APR, CXY	enzyme	Lyase E.C.4.2.1.45 BRENDA
related structures	by homologous chain: 1RKX
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi complexed with CDP-D-xylose., Koropatkin NM, Holden HM, Acta Crystallogr D Biol Crystallogr 2005 Apr;61(Pt 4):365-73. Epub 2005, Mar 24. PMID:15805590

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (1wvg.pdb1.gz) 241 Kb LPC: Ligand-Protein Contacts for 1WVG CSU: Contacts of Structural Units for 1WVG Likely Quarternary Molecular Structure file(s) for 1WVG Structure Factors (616 Kb) Retrieve 1WVG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WVG from S2C, [Save to disk] Re-refined 1wvg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WVG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WVG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WVG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wvg_A] [1wvg_B] [1wvg] SWISS-PROT database: [P26397] Domain organization of [RFBG_SALTY] by SWISSPFAM

Other resources with information on 1WVG

Community annotation for 1WVG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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