1WVX Transferase date Dec 27, 2004
title Crystal Structures Of Kinase Domain Of Dap Kinase In Complex Small Molecular Inhibitors
authors Y.Ueda, H.Ogata, A.Yamakawa, Y.Higuchi
compound source
Molecule: Death-Associated Protein Kinase 1
Chain: A
Fragment: Catalytic Domain
Synonym: Dap Kinase 1
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet31
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.337 108.869 50.186 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand BD4 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1wvx.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1WVX
  • CSU: Contacts of Structural Units for 1WVX
  • Likely Quarternary Molecular Structure file(s) for 1WVX
  • Retrieve 1WVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WVX from S2C, [Save to disk]
  • View 1WVX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WVX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WVX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wvx_A] [1wvx]
  • SWISS-PROT database: [P53355]
  • Domain organization of [DAPK1_HUMAN] by SWISSPFAM
  • Domain found in 1WVX: [S_TKc ] by SMART
  • Other resources with information on 1WVX
  • Community annotation for 1WVX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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