1WXR Hydrolase date Jan 31, 2005
title Crystal Structure Of Heme Binding Protein, An Autotransporte Hemoglobine Protease From Pathogenic Escherichia Coli
authors B.R.Otto, R.Sijbrandi, J.Luirink, B.Oudega, J.G.Heddle, K.Mizutan Y.Park, J.R.H.Tame
compound source
Molecule: Haemoglobin Protease
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Hbp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5 Alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacyc184
symmetry Space Group: P 61 2 2
R_factor 0.203 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.028 115.028 437.057 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of Hemoglobin Protease, a Heme Binding Autotransporter Protein from Pathogenic Escherichia coli., Otto BR, Sijbrandi R, Luirink J, Oudega B, Heddle JG, Mizutani K, Park SY, Tame JR, J Biol Chem 2005 Apr 29;280(17):17339-45. Epub 2005 Feb 22. PMID:15728184
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (1wxr.pdb1.gz) 163 Kb
  • CSU: Contacts of Structural Units for 1WXR
  • Likely Quarternary Molecular Structure file(s) for 1WXR
  • Structure Factors (635 Kb)
  • Retrieve 1WXR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WXR from S2C, [Save to disk]
  • Re-refined 1wxr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WXR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WXR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WXR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wxr] [1wxr_A]
  • SWISS-PROT database: [O88093]
  • Domain organization of [HBP_ECOLX] by SWISSPFAM
  • Other resources with information on 1WXR
  • Community annotation for 1WXR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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