1WXX Transferase date Feb 02, 2005
title Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8
authors A.A.Pioszak, K.Murayama, N.Nakagawa, A.Ebihara, S.Kuramitsu, M.Sh S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Hypothetical Protein Ttha1280
Chain: A, B, C, D
Synonym: Tt1595
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11
symmetry Space Group: P 1
R_factor 0.203 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.551 82.318 79.616 96.34 90.14 103.06
method X-Ray Diffractionresolution 1.80 Å
ligand K, MSE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine., Pioszak AA, Murayama K, Nakagawa N, Ebihara A, Kuramitsu S, Shirouzu M, Yokoyama S, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2005 Oct 1;61(Pt, 10):867-74. Epub 2005 Sep 30. PMID:16511182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]
  • Biological Unit Coordinates (1wxx.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (1wxx.pdb2.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 1WXX
  • CSU: Contacts of Structural Units for 1WXX
  • Likely Quarternary Molecular Structure file(s) for 1WXX
  • Structure Factors (2727 Kb)
  • Retrieve 1WXX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WXX from S2C, [Save to disk]
  • Re-refined 1wxx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WXX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WXX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WXX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wxx_B] [1wxx] [1wxx_A] [1wxx_D] [1wxx_C]
  • SWISS-PROT database: [Q5SIT4]
  • Domain organization of [Q5SIT4_THET8] by SWISSPFAM
  • Other resources with information on 1WXX
  • Community annotation for 1WXX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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