1WYT	Oxidoreductase	date	Feb 17, 2005
title	Crystal Structure Of Glycine Decarboxylase (P-Protein) Of Th Cleavage System, In Apo Form
authors	T.Nakai, N.Nakagawa, N.Maoka, R.Masui, S.Kuramitsu, N.Kamiya, Rike Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Glycine Dehydrogenase (Decarboxylating) Subunit 1 Chain: A, C Synonym: P-Protein Of The Glycine Cleavage System Subunit 1 Ec: 1.4.4.2 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Gcsa Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Blr(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
Molecule: Glycine Dehydrogenase Subunit 2 (P-Protein) Chain: B, D Synonym: P-Protein Of The Glycine Cleavage System Subunit 2 Ec: 1.4.4.2 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Gcsb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Blr(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 32 2 1	R_factor 0.177 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.554 89.554 371.052 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand		enzyme	Oxidoreductase E.C.1.4.4.2 BRENDA
related structures	by homologous chain: 1WYU, 1WYV
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia., Nakai T, Nakagawa N, Maoka N, Masui R, Kuramitsu S, Kamiya N, EMBO J 2005 Mar 24;. PMID:15791207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk] Biological Unit Coordinates (1wyt.pdb1.gz) 295 Kb CSU: Contacts of Structural Units for 1WYT Likely Quarternary Molecular Structure file(s) for 1WYT Structure Factors (538 Kb) Retrieve 1WYT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WYT from S2C, [Save to disk] Re-refined 1wyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WYT in 3D

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Visual 3D analysis of 1WYT

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WYT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wyt] [1wyt_D] [1wyt_C] [1wyt_A] [1wyt_B] SWISS-PROT database: [Q5SKW7] [Q5SKW8] Domain organization of [GCSPB_THET8] [Q5SKW8_THET8] by SWISSPFAM

Other resources with information on 1WYT

Community annotation for 1WYT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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