1WYU	Oxidoreductase	date	Feb 17, 2005
title	Crystal Structure Of Glycine Decarboxylase (P-Protein) Of Th Cleavage System, In Holo Form
authors	T.Nakai, N.Nakagawa, N.Maoka, R.Masui, S.Kuramitsu, N.Kamiya, Rike Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Glycine Dehydrogenase (Decarboxylating) Subunit 1 Chain: A, C, E, G Synonym: P-Protein Of The Glycine Cleavage System Subunit 1 Ec: 1.4.4.2 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Gcsa Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Blr(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
Molecule: Glycine Dehydrogenase Subunit 2 (P-Protein) Chain: B, D, F, H Synonym: P-Protein Of The Glycine Cleavage System Subunit 2 Ec: 1.4.4.2 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Gcsb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Blr(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.874 166.673 189.007 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	PLP	enzyme	Oxidoreductase E.C.1.4.4.2 BRENDA
related structures	by homologous chain: 1WYT
Gene Ontology	Chain Function Process Component A, E, C, G F, B, H, D
Primary reference	Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia., Nakai T, Nakagawa N, Maoka N, Masui R, Kuramitsu S, Kamiya N, EMBO J 2005 Mar 24;. PMID:15791207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (609 Kb) [Save to disk] Biological Unit Coordinates (1wyu.pdb1.gz) 304 Kb Biological Unit Coordinates (1wyu.pdb2.gz) 307 Kb LPC: Ligand-Protein Contacts for 1WYU CSU: Contacts of Structural Units for 1WYU Likely Quarternary Molecular Structure file(s) for 1WYU Structure Factors (1985 Kb) Retrieve 1WYU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WYU from S2C, [Save to disk] Re-refined 1wyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WYU in 3D

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Visual 3D analysis of 1WYU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WYU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wyu_B] [1wyu_E] [1wyu_D] [1wyu_F] [1wyu] [1wyu_A] [1wyu_G] [1wyu_H] [1wyu_C] SWISS-PROT database: [Q5SKW7] [Q5SKW8] Domain organization of [GCSPB_THET8] [Q5SKW8_THET8] by SWISSPFAM

Other resources with information on 1WYU

Community annotation for 1WYU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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