1WZV	Ligase	date	Mar 10, 2005
title	Crystal Structure Of Ubch8
authors	T.Mizushima, M.Suzuki, N.Teshima, T.Yamane, S.Murata, K.Tanaka
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 L6 Chain: A, B Synonym: Ubiquitin-Conjugating Enzyme Ubch8, Ubiquitin-Prot L6, Ubiquitin Carrier Protein L6, Ubch8, Retinoic Acid Indu Protein, Rig-B; Ec: 6.3.2.19 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Ripl) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 1 21 1	R_factor 0.207 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.231 35.486 92.580 90.00 104.55 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand		enzyme	Ligase E.C.6.3.2.19 BRENDA
related structures	by homologous chain: 1WZW
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1wzv.pdb1.gz) 26 Kb Biological Unit Coordinates (1wzv.pdb2.gz) 26 Kb CSU: Contacts of Structural Units for 1WZV Likely Quarternary Molecular Structure file(s) for 1WZV Structure Factors (139 Kb) Retrieve 1WZV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WZV from S2C, [Save to disk] Re-refined 1wzv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WZV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WZV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WZV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wzv_B] [1wzv] [1wzv_A] SWISS-PROT database: [O14933] Domain organization of [UB2L6_HUMAN] by SWISSPFAM Domain found in 1WZV: [UBCc ] by SMART

Other resources with information on 1WZV

Community annotation for 1WZV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---