1WZW	Ligase	date	Mar 10, 2005
title	Crystal Structure Of Ubch8
authors	T.Mizushima, M.Suzuki, N.Teshima, T.Yamane, S.Murata, K.Tanaka
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 L6 Chain: A Synonym: Ubiquitin-Conjugating Enzyme Ubch8, Ubiquitin-Prot L6, Ubiquitin Carrier Protein L6, Ubch8, Retinoic Acid Indu Protein, Rig-B; Ec: 6.3.2.19 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Ripl) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: C 1 2 1	R_factor 0.200 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.932 33.424 50.432 90.00 108.94 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand		enzyme	Ligase E.C.6.3.2.19 BRENDA
related structures	by homologous chain: 1WZV
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (1wzw.pdb1.gz) 25 Kb CSU: Contacts of Structural Units for 1WZW Likely Quarternary Molecular Structure file(s) for 1WZW Structure Factors (43 Kb) Retrieve 1WZW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WZW from S2C, [Save to disk] Re-refined 1wzw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WZW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WZW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WZW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wzw_A] [1wzw] SWISS-PROT database: [O14933] Domain organization of [UB2L6_HUMAN] by SWISSPFAM Domain found in 1WZW: [UBCc ] by SMART

Other resources with information on 1WZW

Community annotation for 1WZW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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