1X60 Hydrolase date May 17, 2005
title Solution Structure Of The Peptidoglycan Binding Domain Of B. Cell Wall Lytic Enzyme Cwlc
authors M.Mishima, T.Shida, K.Yabuki, K.Kato, J.Sekiguchi, C.Kojima
compound source
Molecule: Sporulation-Specific N-Acetylmuramoyl-L-Alanine A
Chain: A
Fragment: Residues 1-79
Synonym: Cell Wall Hydrolase, Autolysin
Ec: 3.5.1.28
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.5.1.28 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution Structure of the Peptidoglycan Binding Domain of Bacillus subtilis Cell Wall Lytic Enzyme CwlC: Characterization of the Sporulation-Related Repeats by NMR(,)., Mishima M, Shida T, Yabuki K, Kato K, Sekiguchi J, Kojima C, Biochemistry 2005 Aug 2;44(30):10153-63. PMID:16042392
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (594 Kb) [Save to disk]
  • Biological Unit Coordinates (1x60.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1X60
  • Original NMR restraints for 1X60 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1X60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X60 from S2C, [Save to disk]
  • View 1X60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X60
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X60, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x60_A] [1x60]
  • SWISS-PROT database: [Q06320]
  • Domain organization of [CWLC_BACSU] by SWISSPFAM
  • Other resources with information on 1X60
  • Community annotation for 1X60 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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