1X70 Hydrolase date Aug 12, 2004
title Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino A Inhibitor
authors D.Kim, L.Wang, M.Beconi, G.J.Eiermann, M.H.Fisher, H.He, G.J.Hicke B.Leiting, K.Lyons
compound source
Molecule: Dipeptidyl Peptidase Iv
Chain: A, B
Fragment: Extracellular Domain
Synonym: Dpp Iv, T-Cell Activation Antigen Cd26, Tp103, Ade Deaminase Complexing Protein-2, Adabp;
Ec: 3.4.14.5
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpp4, Adcp2, Cd26
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: Hi5
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pbluebac4.5
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.253 125.680 137.206 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 715, NA, NAG, NDG BindingDB enzyme Hydrolase E.C.3.4.14.5 BRENDA
related structures by homologous chain: 1NU6, 1TK3
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • virus receptor activity
  • chemorepellent activity


  • Primary reference(2R)-4-oxo-4-[3-(trifluoromethyl)-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazin -7(8H)-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine: a potent, orally active dipeptidyl peptidase IV inhibitor for the treatment of type 2 diabetes., Kim D, Wang L, Beconi M, Eiermann GJ, Fisher MH, He H, Hickey GJ, Kowalchick JE, Leiting B, Lyons K, Marsilio F, McCann ME, Patel RA, Petrov A, Scapin G, Patel SB, Roy RS, Wu JK, Wyvratt MJ, Zhang BB, Zhu L, Thornberry NA, Weber AE, J Med Chem 2005 Jan 13;48(1):141-51. PMID:15634008
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (1x70.pdb1.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 1X70
  • CSU: Contacts of Structural Units for 1X70
  • Likely Quarternary Molecular Structure file(s) for 1X70
  • Structure Factors (1011 Kb)
  • Retrieve 1X70 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X70 from S2C, [Save to disk]
  • Re-refined 1x70 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1X70 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X70
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X70, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x70] [1x70_B] [1x70_A]
  • SWISS-PROT database: [P27487]
  • Domain organization of [DPP4_HUMAN] by SWISSPFAM
  • Other resources with information on 1X70
  • Community annotation for 1X70 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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