1X79 Protein Transport date Aug 13, 2004
title Crystal Structure Of Human Gga1 Gat Domain Complexed With Th Binding Domain Of Rabaptin5
authors G.Zhu, X.C.Zhang
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: A
Synonym: Golgi-Localized, Gamma Ear-Containing, Arf-Binding 1, Gamma-Adaptin Related Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gga1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1

Molecule: Rab Gtpase Binding Effector Protein 1
Chain: B, C
Synonym: Rabaptin-5, Rabaptin-5alpha, Rabaptin-4
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rabep1, Rabpt5, Rabpt5a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 32 2 1
R_factor 0.233 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.222 155.222 53.052 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.41 Å
ligand DTT, SO4 enzyme
related structures by homologous chain: 1NWM, 1OXZ
Gene
Ontology
ChainFunctionProcessComponent
A


C, B


Primary referenceCrystal structure of human GGA1 GAT domain complexed with the GAT-binding domain of Rabaptin5., Zhu G, Zhai P, He X, Wakeham N, Rodgers K, Li G, Tang J, Zhang XC, EMBO J 2004 Sep 30;. PMID:15457209
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1x79.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1X79
  • CSU: Contacts of Structural Units for 1X79
  • Likely Quarternary Molecular Structure file(s) for 1X79
  • Structure Factors (209 Kb)
  • Retrieve 1X79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X79 from S2C, [Save to disk]
  • Re-refined 1x79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1X79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X79
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X79, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1x79a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1x79b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1x79c_, region C [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x79_C] [1x79_B] [1x79_A] [1x79]
  • SWISS-PROT database: [Q9UJY5] [Q15276]
  • Domain organization of [GGA1_HUMAN] [RABE1_HUMAN] by SWISSPFAM
  • Other resources with information on 1X79
  • Community annotation for 1X79 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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