1XCD Structural Protein date Sep 01, 2004
title Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
authors P.G.Scott, P.A.Mcewan, C.M.Dodd, E.M.Bergmann, P.N.Bishop, J.Bell
compound source
Molecule: Decorin
Chain: A
Synonym: Bone Proteoglycan II, Pg-S2
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Other_details: Extracted From Calf Skin Under Denaturing Co And Refolded
symmetry Space Group: C 2 2 21
R_factor 0.222 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.380 124.110 129.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand NAG, TRS enzyme
related structures by homologous chain: 1XEC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan., Scott PG, McEwan PA, Dodd CM, Bergmann EM, Bishop PN, Bella J, Proc Natl Acad Sci U S A 2004 Nov 2;101(44):15633-8. Epub 2004 Oct 22. PMID:15501918
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1xcd.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 1XCD
  • CSU: Contacts of Structural Units for 1XCD
  • Likely Quarternary Molecular Structure file(s) for 1XCD
  • Structure Factors (144 Kb)
  • Retrieve 1XCD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XCD from S2C, [Save to disk]
  • Re-refined 1xcd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XCD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XCD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XCD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xcda_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xcd_A] [1xcd]
  • SWISS-PROT database: [P21793]
  • Domain organization of [PGS2_BOVIN] by SWISSPFAM
  • Domains found in 1XCD: [LRR] [LRRNT] [LRR_TYP ] by SMART
  • Other resources with information on 1XCD
  • Community annotation for 1XCD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science