1XEO	Hydrolase	date	Sep 10, 2004
title	High Resolution Crystals Structure Of Cobalt- Peptide Deform Bound To Formate
authors	R.Jain, B.Hao, R.P.Liu, M.K.Chan
compound		source
Molecule: Peptide Deformylase Chain: A Synonym: Pdf, Polypeptide Deformylase Ec: 3.5.1.88		Organism_scientific: Escherichia Coli Organism_taxid: 469008 Strain: Bl21(De3)
symmetry	Space Group: P 61 2 2	R_factor 0.200 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.420 54.420 224.430 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	CO, FMT	enzyme	Hydrolase E.C.3.5.1.88 BRENDA
related structures	by homologous chain: 1G2A
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of E. coli peptide deformylase bound to formate: insight into the preference for Fe2+ over Zn2+ as the active site metal., Jain R, Hao B, Liu RP, Chan MK, J Am Chem Soc 2005 Apr 6;127(13):4558-9. PMID:15796505

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (1xeo.pdb1.gz) 31 Kb LPC: Ligand-Protein Contacts for 1XEO CSU: Contacts of Structural Units for 1XEO Likely Quarternary Molecular Structure file(s) for 1XEO Structure Factors (393 Kb) Retrieve 1XEO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XEO from S2C, [Save to disk] Re-refined 1xeo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1XEO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XEO

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1XEO from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XEO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xeo_A] [1xeo] SWISS-PROT database: [P0A6K3] Domain organization of [DEF_ECOLI] by SWISSPFAM

Other resources with information on 1XEO

Community annotation for 1XEO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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