1XHV HincII bound to cleaved cognate DNA GTCGAC and Mn2+ date
authors Etzkorn, C., Horton, N.C.
compound source
symmetry
R_factor
R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand MN enzyme
related structures by homologous chain: 1TX3
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • nuclease activity
  • endonuclease activity


    • Primary referenceMechanistic insights from the structures of HincII bound to cognate DNA cleaved from addition of Mg2+ and Mn2+., Etzkorn C, Horton NC, J Mol Biol 2004 Oct 29;343(4):833-49. PMID:15476804
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (1xhv.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (1xhv.pdb2.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 1XHV
  • CSU: Contacts of Structural Units for 1XHV
  • Likely Quarternary Molecular Structure file(s) for 1XHV
  • Retrieve 1XHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XHV from S2C, [Save to disk]
    • View 1XHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XHV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XHV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xhva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1xhvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1xhvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1xhvd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xhv_C] [1xhv_K] [1xhv_A] [1xhv_B] [1xhv_G] [1xhv_L] [1xhv_I] [1xhv_E] [1xhv_F] [1xhv_D] [1xhv_H] [1xhv_J] [1xhv]
  • SWISS-PROT database: [P17743]
  • Domain organization of [T2C2_HAEIN] by SWISSPFAM
    • Other resources with information on 1XHV
  • Community annotation for 1XHV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science