1XJI Membrane Protein date Sep 23, 2004
title Bacteriorhodopsin Crystallized In Bicelles At Room Temperatu
authors S.Faham, G.L.Boulting, E.A.Massey, S.Yohannan, D.Yang, J.U.Bowie
compound source
Molecule: Bacteriorhodopsin
Chain: A
Synonym: Br
 Organism_scientific: Halobacterium Salinarum
Organism_taxid: 2242
Strain: L33
symmetry Space Group: C 2 2 21
R_factor 0.226 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.658 102.515 128.243 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand C14, CPS, D10, D12, OCT, RET enzyme
related structures by homologous chain: 1PXS, 1S54
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


    • Primary referenceCrystallization of bacteriorhodopsin from bicelle formulations at room temperature., Faham S, Boulting GL, Massey EA, Yohannan S, Yang D, Bowie JU, Protein Sci 2005 Mar;14(3):836-40. Epub 2005 Feb 2. PMID:15689517
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1xji.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1XJI
  • CSU: Contacts of Structural Units for 1XJI
  • Likely Quarternary Molecular Structure file(s) for 1XJI
  • Retrieve 1XJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XJI from S2C, [Save to disk]
    • View 1XJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XJI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XJI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xji] [1xji_A]
  • SWISS-PROT database: [P02945]
  • Belongs to the ion-translocating microbial rhodopsin (mr) family according to TCDB.
  • Domain organization of [BACR_HALSA] by SWISSPFAM
  • Domain found in 1XJI: [Bac_rhodopsin ] by SMART
    • Other resources with information on 1XJI
  • Community annotation for 1XJI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science