1XJR Rna date Sep 24, 2004
title The Structure Of A Rigorously Conserved Rna Element Within T Virus Genome
authors M.P.Robertson, H.Igel, R.Baertsch, D.Haussler, M.Ares Jr., W.G.Sc
compound source
Molecule: S2m Rna
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: In Vitro Transcription From T7 Rna Polymeras Template
symmetry Space Group: P 65 2 2
R_factor 0.231 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.218 93.218 128.109 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand GTP, MG enzyme
Primary referenceThe structure of a rigorously conserved RNA element within the SARS virus genome., Robertson MP, Igel H, Baertsch R, Haussler D, Ares M Jr, Scott WG, PLoS Biol 2005 Jan;3(1):e5. Epub 2004 Dec 28. PMID:15630477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1xjr.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1XJR
  • CSU: Contacts of Structural Units for 1XJR
  • Likely Quarternary Molecular Structure file(s) for 1XJR
  • Structure Factors (127 Kb)
  • Retrieve 1XJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XJR from S2C, [Save to disk]
  • Re-refined 1xjr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XJR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XJR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xjr_A] [1xjr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1XJR
  • Community annotation for 1XJR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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