1XOV	Hydrolase	date	Oct 07, 2004
title	The Crystal Structure Of The Listeria Monocytogenes Bacterio Endolysin Plypsa
authors	I.P.Korndoerfer, A.Skerra
compound		source
Molecule: Ply Protein Chain: A Synonym: Plypsa Ec: 3.5.1.28 Engineered: Yes		Organism_scientific: Listeria Phage Psa Organism_taxid: 171618 Gene: Ply Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm83 Expression_system_vector_type: Plasmid Expression_system_plasmid: Psplpsa Other_details: Host: Listeria Monocytogenes
symmetry	Space Group: P 61 2 2	R_factor 0.170 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.586 90.586 213.667 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CL, GLU, LYS, SO4, TRS, ZN	enzyme	Hydrolase E.C.3.5.1.28 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The crystal structure of the bacteriophage PSA endolysin reveals a unique fold responsible for specific recognition of Listeria cell walls., Korndorfer IP, Danzer J, Schmelcher M, Zimmer M, Skerra A, Loessner MJ, J Mol Biol. 2006 Dec 8;364(4):678-89. Epub 2006 Aug 30. PMID:17010991

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (1xov.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 1XOV CSU: Contacts of Structural Units for 1XOV Likely Quarternary Molecular Structure file(s) for 1XOV Structure Factors (469 Kb) Retrieve 1XOV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XOV from S2C, [Save to disk] Re-refined 1xov structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1XOV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XOV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XOV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xov_A] [1xov] SWISS-PROT database: [Q8W5Y8] Domain organization of [Q8W5Y8_9CAUD] by SWISSPFAM Domain found in 1XOV: [Ami_3 ] by SMART

Other resources with information on 1XOV

Community annotation for 1XOV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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