1XPM Transferase date Oct 08, 2004
title Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase Coa And Acetoacetyl-Coa And Acetylated Cysteine
authors M.J.Theisen, I.Misra, D.Saadat, N.Campobasso, H.M.Miziorko, D.H.T
compound source
Molecule: 3-Hydroxy-3-Methylglutaryl Coa Synthase
Chain: A, B, C, D
Ec: 2.3.3.10
Engineered: Yes
Organism_scientific: Staphylococcus Aureus Subsp. Aureus
Organism_taxid: 46170
Strain: Subsp. Aureus
Gene: Mvas
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23d
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.119 118.774 121.304 90.00 90.08 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CAA, HMG, SCY, SO4 enzyme Transferase E.C.2.3.3.10 BRENDA
related structures by homologous chain: 1TVZ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary reference3-hydroxy-3-methylglutaryl-CoA synthase intermediate complex observed in "real-time", Theisen MJ, Misra I, Saadat D, Campobasso N, Miziorko HM, Harrison DH, Proc Natl Acad Sci U S A 2004 Oct 21;. PMID:15498869
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (308 Kb) [Save to disk]
  • Biological Unit Coordinates (1xpm.pdb1.gz) 152 Kb
  • Biological Unit Coordinates (1xpm.pdb2.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 1XPM
  • CSU: Contacts of Structural Units for 1XPM
  • Likely Quarternary Molecular Structure file(s) for 1XPM
  • Structure Factors (1780 Kb)
  • Retrieve 1XPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XPM from S2C, [Save to disk]
  • View 1XPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XPM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XPM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xpma2, region A:168-388 [Jmol] [rasmolscript] [script source]
        - Domain d1xpma1, region A:2-167 [Jmol] [rasmolscript] [script source]
        - Domain d1xpmb2, region B:168-388 [Jmol] [rasmolscript] [script source]
        - Domain d1xpmb1, region B:2-167 [Jmol] [rasmolscript] [script source]
        - Domain d1xpmc2, region C:168-388 [Jmol] [rasmolscript] [script source]
        - Domain d1xpmc1, region C:2-167 [Jmol] [rasmolscript] [script source]
        - Domain d1xpmd2, region D:168-388 [Jmol] [rasmolscript] [script source]
        - Domain d1xpmd1, region D:2-167 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xpm_A] [1xpm_C] [1xpm] [1xpm_B] [1xpm_D]
  • SWISS-PROT database: [Q79ZY6]
  • Domain organization of [Q79ZY6_STAAW] by SWISSPFAM
  • Other resources with information on 1XPM
  • Community annotation for 1XPM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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