1XRI	Structural Genomics, Unknown Function	date	Oct 14, 2004
title	X-Ray Structure Of A Putative Phosphoprotein Phosphatase Fro Arabidopsis Thaliana Gene At1g05000
authors	G.E.Wesenberg, D.W.Smith, G.N.Phillips Jr., E.Bitto, C.A.Bingman S.T.M.Allard, Center For Eukaryotic Structural Genomics (Ces
compound		source
Molecule: At1g05000 Chain: A, B Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: At1g05000 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvp-13 Other_details: Pqe Derivative
symmetry	Space Group: P 21 3	R_factor 0.204 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.483 124.483 124.483 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	MSE, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000., Aceti DJ, Bitto E, Yakunin AF, Proudfoot M, Bingman CA, Frederick RO, Sreenath HK, Vojtik FC, Wrobel RL, Fox BG, Markley JL, Phillips GN Jr, Proteins. 2008 Oct;73(1):241-53. PMID:18433060

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (1xri.pdb1.gz) 48 Kb Biological Unit Coordinates (1xri.pdb2.gz) 141 Kb LPC: Ligand-Protein Contacts for 1XRI CSU: Contacts of Structural Units for 1XRI Likely Quarternary Molecular Structure file(s) for 1XRI Structure Factors (558 Kb) Retrieve 1XRI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XRI from S2C, [Save to disk] Re-refined 1xri structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1XRI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XRI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XRI, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1xria_, region A [Jmol] [rasmolscript] [script source]     - Domain d1xrib_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xri_A] [1xri] [1xri_B] SWISS-PROT database: [Q9ZVN4] Domain organization of [Y1500_ARATH] by SWISSPFAM

Other resources with information on 1XRI

Community annotation for 1XRI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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