1XUR Hydrolase date Oct 26, 2004
title Matrix Metalloproteinase-13 Complexed With Non-Zinc Binding
authors C.K.Engel, K.U.Wendt
compound source
Molecule: Collagenase 3
Chain: A, B
Fragment: Catalytic Domain
Synonym: Matrix Metalloproteinase-13, Mmp-13
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.167 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.508 36.486 95.586 90.00 130.52 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand CA, PB5, ZN BindingDB enzyme Hydrolase E.C.3.4.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMaking a new turn in matrix metalloprotease inhibition., Wasserman ZR, Chem Biol 2005 Feb;12(2):143-4. PMID:15734640
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1xur.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (1xur.pdb2.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 1XUR
  • CSU: Contacts of Structural Units for 1XUR
  • Likely Quarternary Molecular Structure file(s) for 1XUR
  • Retrieve 1XUR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XUR from S2C, [Save to disk]
  • View 1XUR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XUR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XUR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xur] [1xur_A] [1xur_B]
  • SWISS-PROT database: [P45452]
  • Domain organization of [MMP13_HUMAN] by SWISSPFAM
  • Domain found in 1XUR: [ZnMc ] by SMART
  • Other resources with information on 1XUR
  • Community annotation for 1XUR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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