1XV3 Antibiotic date Oct 27, 2004
title Nmr Structure Of The Synthetic Penaeidin 4
authors B.J.Cuthbertson, Y.Yang, E.E.Bullesbach, E.Bachere, P.S.Gross, A.
compound source
Molecule: Penaeidin-4d
Chain: A
Synonym: Pen-4d
Engineered: Yes
 Synthetic: Yes
Other_details: The Molecule Has Been Synthesized By Using T Ligation Methodology
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution Structure of Synthetic Penaeidin-4 with Structural and Functional Comparisons with Penaeidin-3., Cuthbertson BJ, Yang Y, Bachere E, Bullesbach EE, Gross PS, Aumelas A, J Biol Chem 2005 Apr 22;280(16):16009-16018. Epub 2005 Feb 7. PMID:15699044
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (1xv3.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1XV3
  • Original NMR restraints for 1XV3 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1XV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XV3 from S2C, [Save to disk]
    • View 1XV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XV3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XV3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xv3_A] [1xv3]
  • SWISS-PROT database: [Q962A7]
  • Domain organization of [PEN4D_LITSE] by SWISSPFAM
    • Other resources with information on 1XV3
  • Community annotation for 1XV3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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