1XV6 The solution structure of 2',5'-linked 3'-O-(2-methoxyethyl)-RNA hairpin date
authors Plevnik, M., Gdaniec, Z., Plavec, J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 30 Modelsresolution
ligand A2L, C2L, G2L, U2L enzyme
Primary referenceSolution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex., Plevnik M, Gdaniec Z, Plavec J, Nucleic Acids Res 2005 Mar 23;33(6):1749-59. Print 2005. PMID:15788747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (1xv6.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 1XV6
  • CSU: Contacts of Structural Units for 1XV6
  • Original NMR restraints for 1XV6 from PDB
  • Retrieve 1XV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XV6 from S2C, [Save to disk]
  • View 1XV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XV6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XV6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xv6] [1xv6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1XV6
  • Community annotation for 1XV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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