1XVC Oxidoreductase date Oct 27, 2004
title Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol So Structure
authors M.H.Sazinsky, S.J.Lippard
compound source
Molecule: Methane Monooxygenase Component A Alpha Chain
Chain: A, B
Fragment: Alpha Subunit
Synonym: Methane Hydroxylase
Ec: 1.14.13.25
Organism_scientific: Methylococcus Capsulatus
Organism_taxid: 414

Molecule: Methane Monooxygenase Component A Beta Chain
Chain: C, D
Fragment: Beta Subunit
Ec: 1.14.13.25

Organism_scientific: Methylococcus Capsulatus
Organism_taxid: 414

Molecule: Methane Monooxygenase Component A Gamma Chain
Chain: E, F
Fragment: Gamma Subunit
Synonym: Methane Hydroxylase
Ec: 1.14.13.25

Organism_scientific: Methylococcus Capsulatus
Organism_taxid: 414
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.411 171.031 221.434 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 5BR, BMM, BR, FE, FMT enzyme Oxidoreductase E.C.1.14.13.25 BRENDA
related structures by homologous chain: 1FZ3, 1XVF
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


F, E


Primary referenceProduct bound structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath): protein motion in the alpha-subunit., Sazinsky MH, Lippard SJ, J Am Chem Soc 2005 Apr 27;127(16):5814-25. PMID:15839679
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (363 Kb) [Save to disk]
  • Biological Unit Coordinates (1xvc.pdb1.gz) 357 Kb
  • LPC: Ligand-Protein Contacts for 1XVC
  • CSU: Contacts of Structural Units for 1XVC
  • Likely Quarternary Molecular Structure file(s) for 1XVC
  • Structure Factors (1869 Kb)
  • Retrieve 1XVC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XVC from S2C, [Save to disk]
  • Re-refined 1xvc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XVC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XVC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XVC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xvc_A] [1xvc_D] [1xvc_F] [1xvc_E] [1xvc_B] [1xvc] [1xvc_C]
  • SWISS-PROT database: [P22869] [P18798] [P11987]
  • Domain organization of [MEMA_METCA] [MEMB_METCA] [MEMG_METCA] by SWISSPFAM
  • Other resources with information on 1XVC
  • Community annotation for 1XVC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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