1XX6 Transferase date Nov 04, 2004
title X-Ray Structure Of Clostridium Acetobutylicum Thymidine Kina Adp. Northeast Structural Genomics Target Car26.
authors A.P.Kuzin, M.Abashidze, F.Forouhar, S.M.Vorobiev, T.B.Acton, L.C R.Xiao, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Consortium (Nesg)
compound source
Molecule: Thymidine Kinase
Chain: A, B
Ec: 2.7.1.21
Engineered: Yes
 Organism_scientific: Clostridium Acetobutylicum
Organism_taxid: 272562
Strain: Atcc 824
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 21 21 2
R_factor 0.241 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.793 67.166 103.638 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ADP, MSE, ZN enzyme Transferase E.C.2.7.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • thymidine kinase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1xx6.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (1xx6.pdb2.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 1XX6
  • CSU: Contacts of Structural Units for 1XX6
  • Likely Quarternary Molecular Structure file(s) for 1XX6
  • Structure Factors (646 Kb)
  • Retrieve 1XX6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XX6 from S2C, [Save to disk]
  • Re-refined 1xx6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XX6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XX6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XX6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xx6a2, region A:143-191 [Jmol] [rasmolscript] [script source]
        - Domain d1xx6a1, region A:2-142 [Jmol] [rasmolscript] [script source]
        - Domain d1xx6b2, region B:143-191 [Jmol] [rasmolscript] [script source]
        - Domain d1xx6b1, region B:2-142 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xx6_B] [1xx6_A] [1xx6]
  • SWISS-PROT database: [Q97F65]
  • Domain organization of [KITH_CLOAB] by SWISSPFAM
    • Other resources with information on 1XX6
  • Community annotation for 1XX6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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