1XXL Structural Genomics, Unknown Function date Nov 05, 2004
title The Crystal Structure Of Ycgj Protein From Bacillus Subitili Resolution
authors T.A.Burke, J.Gorman, L.Shaprio, S.K.Burley, New York Sgx Researc For Structural Genomics (Nysgxrc)
compound source
Molecule: Ycgj Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: 168
Gene: Ycgj
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet 28b
symmetry Space Group: C 2 2 21
R_factor 0.176 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.928 74.212 246.161 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1xxl.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (1xxl.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1XXL
  • CSU: Contacts of Structural Units for 1XXL
  • Likely Quarternary Molecular Structure file(s) for 1XXL
  • Structure Factors (286 Kb)
  • Retrieve 1XXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XXL from S2C, [Save to disk]
  • Re-refined 1xxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XXL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XXL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xxla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1xxlb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xxl_A] [1xxl] [1xxl_B]
  • SWISS-PROT database: [O31474]
  • Domain organization of [YCGJ_BACSU] by SWISSPFAM
    • Other resources with information on 1XXL
  • Community annotation for 1XXL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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