1Y04 Antifreeze Protein date Nov 14, 2004
title Solution Structure Of A Recombinant Type I Sculpin Antifreez
authors A.H.Y.Kwan, K.Fairley, P.I.Anderberg, C.W.Liew, M.M.Harding, J.P.
compound source
Molecule: Antifreeze Peptide Ss-3
Chain: A
Synonym: Rss3
Engineered: Yes
 Organism_scientific: Myoxocephalus Scorpius
Organism_common: Shorthorn Sculpin
Organism_taxid: 8097
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
related structures by homologous chain: 1Y03
Primary referenceSolution structure of a recombinant type I sculpin antifreeze protein., Kwan AH, Fairley K, Anderberg PI, Liew CW, Harding MM, Mackay JP, Biochemistry 2005 Feb 15;44(6):1980-8. PMID:15697223
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (1y04.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1Y04
  • Original NMR restraints for 1Y04 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Y04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y04 from S2C, [Save to disk]
    • View 1Y04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y04
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y04, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y04_A] [1y04]
  • SWISS-PROT database: [P04367]
  • Domain organization of [ANP3_MYOSC] by SWISSPFAM
    • Other resources with information on 1Y04
  • Community annotation for 1Y04 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science