1Y0G Lipid Binding Protein date Nov 15, 2004
title Crystal Structure Of The Escherichia Coli Ycei Protein, Stru Genomics
authors Y.V.Patskovsky, B.Strokopytov, U.Ramagopal, S.C.Almo, S.K.Burley Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Protein Ycei
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Ycei
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.228 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
188.170 41.930 130.250 90.00 126.33 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 8PP enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (1y0g.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (1y0g.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1Y0G
  • CSU: Contacts of Structural Units for 1Y0G
  • Likely Quarternary Molecular Structure file(s) for 1Y0G
  • Structure Factors (313 Kb)
  • Retrieve 1Y0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y0G from S2C, [Save to disk]
  • Re-refined 1y0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Y0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y0G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y0G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1y0ga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1y0gb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1y0gc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1y0gd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y0g_B] [1y0g_D] [1y0g] [1y0g_C] [1y0g_A]
  • SWISS-PROT database: [P0A8X2]
  • Domain organization of [YCEI_ECOLI] by SWISSPFAM
  • Domain found in 1Y0G: [YceI ] by SMART
    • Other resources with information on 1Y0G
  • Community annotation for 1Y0G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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