1Y0M Hydrolase date Nov 15, 2004
title Crystal Structure Of Of The Sh3 Domain Of Phospholipase C Ga
authors R.Mariuzza, C.Sangwoo
compound source
Molecule: 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodi Gamma 1;
Chain: A
Fragment: Sh3 Domain: Sequence Database Residues 791-851
Synonym: Phosphoinositide Phospholipase C, Plc-Gamma-1, Pho C-Gamma-1, Plc-II, Plc-148;
Ec: 3.1.4.11
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Plcg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 1 21 1
R_factor 0.151 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.748 30.978 29.753 90.00 92.12 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand
enzyme Hydrolase E.C.3.1.4.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1y0m.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1Y0M
  • Likely Quarternary Molecular Structure file(s) for 1Y0M
  • Structure Factors (151 Kb)
  • Retrieve 1Y0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y0M from S2C, [Save to disk]
  • Re-refined 1y0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y0M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y0M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y0m] [1y0m_A]
  • SWISS-PROT database: [P10686]
  • Domain organization of [PLCG1_RAT] by SWISSPFAM
  • Domain found in 1Y0M: [SH3 ] by SMART
  • Other resources with information on 1Y0M
  • Community annotation for 1Y0M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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