1Y0P Oxidoreductase date Nov 16, 2004
title Flavocytochrome C3 With Mesaconate Bound
authors C.G.Mowat, C.Wardrope, G.A.Reid, S.K.Chapman
compound source
Molecule: Fumarate Reductase Flavoprotein Subunit
Chain: A
Synonym: Flavocytochrome C, Flavocytochrome C3, Fcc3
Ec: 1.3.99.1
Engineered: Yes
Organism_scientific: Shewanella Frigidimarina
Organism_taxid: 56812
Gene: Fcca
Expression_system: Shewanella Frigidimarina
Expression_system_taxid: 56812
Expression_system_strain: Eg301
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmmb503eh
symmetry Space Group: P 1 21 1
R_factor 0.151 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.449 91.687 78.287 90.00 91.13 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand FAD, HEM, MEZ, NA enzyme Oxidoreductase E.C.1.3.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (1y0p.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 1Y0P
  • CSU: Contacts of Structural Units for 1Y0P
  • Likely Quarternary Molecular Structure file(s) for 1Y0P
  • Structure Factors (713 Kb)
  • Retrieve 1Y0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y0P from S2C, [Save to disk]
  • Re-refined 1y0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y0P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y0P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y0p] [1y0p_A]
  • SWISS-PROT database: [P0C278]
  • Domain organization of [FRDA_SHEFR] by SWISSPFAM
  • Other resources with information on 1Y0P
  • Community annotation for 1Y0P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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