1Y2G Cell Cycle date Nov 22, 2004
title Crystal Structure Of Zipa In Complex With An Inhibitor
authors L.Mosyak, T.S.Rush
compound source
Molecule: Cell Division Protein Zipa
Chain: A, B
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Zipa
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.695 39.521 70.271 90.00 104.97 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL3 BindingDB enzyme
related structures by homologous chain: 1F46, 1F47
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction., Rush TS 3rd, Grant JA, Mosyak L, Nicholls A, J Med Chem 2005 Mar 10;48(5):1489-95. PMID:15743191
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1y2g.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (1y2g.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1Y2G
  • CSU: Contacts of Structural Units for 1Y2G
  • Likely Quarternary Molecular Structure file(s) for 1Y2G
  • Retrieve 1Y2G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y2G from S2C, [Save to disk]
    • View 1Y2G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y2G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y2G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y2g_A] [1y2g_B] [1y2g]
  • SWISS-PROT database: [P77173]
  • Domain organization of [ZIPA_ECOLI] by SWISSPFAM
  • Domain found in 1Y2G: [ZipA_C ] by SMART
    • Other resources with information on 1Y2G
  • Community annotation for 1Y2G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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