1Y5M	Oxidoreductase	date	Dec 02, 2004
title	The Crystal Structure Of Murine 11b-Hydroxysteroid Dehydroge Important Therapeutic Target For Diabetes
authors	J.Zhang, T.D.Osslund, M.H.Plant, C.L.Clogston, R.E.Nybo, F.Xiong, J.M.Delaney, S.R.Jordan
compound		source
Molecule: Corticosteroid 11-Beta-Dehydrogenase, Isozyme 1 Chain: A, B Fragment: Sequence Database Residues 24-292 Synonym: 11-Dh, 11-Beta-Hydroxysteroid Dehydrogenase 1, 11- 11beta-Hsd1a; Ec: 1.1.1.146 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Hsd11b1, Hsd11 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Gm221 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pamg21
symmetry	Space Group: P 41 2 2	R_factor 0.219 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.718 96.718 219.302 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	NDP, OCT, SO4	enzyme	Oxidoreductase E.C.1.1.1.146 BRENDA
note	1Y5M is a representative structure
related structures	by homologous chain: 1XSE, 2BEL
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of Murine 11beta-Hydroxysteroid Dehydrogenase 1: An Important Therapeutic Target for Diabetes., Zhang J, Osslund TD, Plant MH, Clogston CL, Nybo RE, Xiong F, Delaney JM, Jordan SR, Biochemistry 2005 May 10;44(18):6948-6957. PMID:15865440

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (1y5m.pdb1.gz) 88 Kb Biological Unit Coordinates (1y5m.pdb2.gz) 173 Kb LPC: Ligand-Protein Contacts for 1Y5M CSU: Contacts of Structural Units for 1Y5M Likely Quarternary Molecular Structure file(s) for 1Y5M Structure Factors (349 Kb) Retrieve 1Y5M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y5M from S2C, [Save to disk] Re-refined 1y5m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y5M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y5M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y5M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y5m] [1y5m_B] [1y5m_A] SWISS-PROT database: [P50172] Domain organization of [DHI1_MOUSE] by SWISSPFAM

Other resources with information on 1Y5M

Community annotation for 1Y5M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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