1Y6B	Transferase	date	Dec 05, 2004
title	Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Ar Inhibitor
authors	P.A.Harris, M.Cheung, R.N.Hunter, M.L.Brown, J.M.Veal, R.T.Nolte, W.Liu, R.M.Crosby, J.H.Johnson, A.H.Epperly, R.Kumar, D.K.Luttre J.A.Stafford
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Synonym: Vegfr-2, Kinase Insert Domain Receptor, Protein-Ty Kinase Receptor Flk-1; Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdr, Flk1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.544 94.333 96.767 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	AAX BindingDB	enzyme	Transferase E.C.2.7.1.112 BRENDA
related structures	by homologous chain: 1Y6A
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery and evaluation of 2-anilino-5-aryloxazoles as a novel class of VEGFR2 kinase inhibitors., Harris PA, Cheung M, Hunter RN 3rd, Brown ML, Veal JM, Nolte RT, Wang L, Liu W, Crosby RM, Johnson JH, Epperly AH, Kumar R, Luttrell DK, Stafford JA, J Med Chem 2005 Mar 10;48(5):1610-9. PMID:15743202

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (1y6b.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 1Y6B CSU: Contacts of Structural Units for 1Y6B Likely Quarternary Molecular Structure file(s) for 1Y6B Structure Factors (189 Kb) Retrieve 1Y6B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y6B from S2C, [Save to disk] Re-refined 1y6b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y6B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y6B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y6B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y6b] [1y6b_A] SWISS-PROT database: [P35968] Domain organization of [VGFR2_HUMAN] by SWISSPFAM Domain found in 1Y6B: [TyrKc ] by SMART

Other resources with information on 1Y6B

Community annotation for 1Y6B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---