1Y6E Transferase date Dec 06, 2004
title Orthorhombic Glutathione S-Transferase Of Schistosoma Japoni
authors A.C.Rufer, L.Thiebach, K.Baer, H.W.Klein, M.Hennig
compound source
Molecule: Glutathione S-Transferase
Chain: A, B
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Schistosoma Japonicum
Organism_taxid: 6182
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pac-G2t
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.220 50.750 57.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Transferase E.C.2.5.1.18 BRENDA
related structures by homologous chain: 1B8X
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceX-ray structure of glutathione S-transferase from Schistosoma japonicum in a new crystal form reveals flexibility of the substrate-binding site., Rufer AC, Thiebach L, Baer K, Klein HW, Hennig M, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2005 Mar 1;61(Pt, 3):263-5. Epub 2005 Feb 24. PMID:16511012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1y6e.pdb1.gz) 65 Kb
  • CSU: Contacts of Structural Units for 1Y6E
  • Likely Quarternary Molecular Structure file(s) for 1Y6E
  • Structure Factors (73 Kb)
  • Retrieve 1Y6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y6E from S2C, [Save to disk]
  • Re-refined 1y6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y6E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y6E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y6e_B] [1y6e] [1y6e_A]
  • SWISS-PROT database: [P08515]
  • Domain organization of [GST26_SCHJA] by SWISSPFAM
  • Other resources with information on 1Y6E
  • Community annotation for 1Y6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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