1Y6J	Oxidoreductase	date	Dec 06, 2004
title	L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-11
authors	L.Chen, H.Yang, I.Kataeva, L.R.Chen, W.Tempel, D.Lee, J.Habel, W.Zh L.Ljungdahl, Z.J.Liu, J.Rose, B.C.Wang, Southeast Collaborato Structural Genomics (Secsg)
compound		source
Molecule: L-Lactate Dehydrogenase Chain: A Ec: 1.1.1.27 Engineered: Yes		Organism_scientific: Clostridium Thermocellum Organism_taxid: 1515 Atcc: 27405 Gene: Cth-1135 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15g
symmetry	Space Group: P 41 21 2	R_factor 0.229 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.360 73.360 191.730 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.01 Å
ligand		enzyme	Oxidoreductase E.C.1.1.1.27 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (1y6j.pdb1.gz) 45 Kb Biological Unit Coordinates (1y6j.pdb2.gz) 88 Kb CSU: Contacts of Structural Units for 1Y6J Likely Quarternary Molecular Structure file(s) for 1Y6J Structure Factors (160 Kb) Retrieve 1Y6J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y6J from S2C, [Save to disk] Re-refined 1y6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y6J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y6J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y6J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1y6ja2, region A:149-317 [Jmol] [rasmolscript] [script source]     - Domain d1y6ja1, region A:7-148 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y6j] [1y6j_A] SWISS-PROT database: [A3DCA4] Domain organization of [A3DCA4_CLOTH] by SWISSPFAM

Other resources with information on 1Y6J

Community annotation for 1Y6J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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