1Y6S Rna date Dec 07, 2004
title Hiv-1 Dis(Mal) Duplex Ba-Soaked
authors E.Ennifar, P.Walter, P.Dumas
compound source
Molecule: 5'-R(Cpupupgpcpupgpapgpgpupgpcpapc Gpcpapapg)-3';
Chain: A, B
Engineered: Yes
Other_details: Hiv-1 Dis Rna
 Synthetic: Yes
symmetry Space Group: P 31 2 1
R_factor 0.248 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.010 58.010 65.420 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand BA enzyme
Primary referenceA crystallographic study of the binding of 13 metal ions to two related RNA duplexes., Ennifar E, Walter P, Dumas P, Nucleic Acids Res 2003 May 15;31(10):2671-82. PMID:12736317
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1y6s.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1Y6S
  • CSU: Contacts of Structural Units for 1Y6S
  • Likely Quarternary Molecular Structure file(s) for 1Y6S
  • Structure Factors (50 Kb)
  • Retrieve 1Y6S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y6S from S2C, [Save to disk]
  • Re-refined 1y6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Y6S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y6S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y6S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y6s_A] [1y6s] [1y6s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1Y6S
  • Community annotation for 1Y6S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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