1Y7J Signaling Protein date Dec 08, 2004
title Nmr Structure Family Of Human Agouti Signalling Protein (80- Q115y, S124y)
authors J.C.Mcnulty, P.J.Jackson, D.A.Thompson, B.Chai, I.Gantz, G.S.Bars P.E.Dawson, G.L.Millhauser
compound source
Molecule: Agouti Signaling Protein
Chain: A
Fragment: Residies 80-132
Synonym: Agouti Switch Protein
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Other_details: Sequence Occurs Naturally In Humans, Genes A Agti, Agtil, Asp
methodSolution NMR
related structures by homologous chain: 1Y7K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the agouti signaling protein., McNulty JC, Jackson PJ, Thompson DA, Chai B, Gantz I, Barsh GS, Dawson PE, Millhauser GL, J Mol Biol. 2005 Mar 4;346(4):1059-70. Epub 2005 Jan 25. PMID:15701517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (1y7j.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1Y7J
  • Retrieve 1Y7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y7J from S2C, [Save to disk]
    • View 1Y7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y7J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y7J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y7j] [1y7j_A]
  • SWISS-PROT database: [P42127]
  • Domain organization of [ASIP_HUMAN] by SWISSPFAM
  • Domain found in 1Y7J: [Agouti ] by SMART
    • Other resources with information on 1Y7J
  • Community annotation for 1Y7J at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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