1Y82 Structural Genomics, Unknown Function date Dec 10, 2004
title Conserved Hypothetical Protein Pfu-367848-001 From Pyrococcu
authors P.Horanyi, W.Tempel, J.Habel, L.Chen, D.Lee, D.Nguyen, S.H.Chang, Q.Florence, W.Zhou, D.Lin, H.Zhang, J.Praissman, F.E.Jenney Jr., M.W.W.Adams, Z.J.Liu, J.P.Rose, B.C.Wang, Southeast Collaborat Structural Genomics (Secsg)
compound source
Molecule: Hypothetical Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.601 103.667 104.253 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • nuclease activity
  • ribonuclease activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1y82.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (1y82.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (1y82.pdb3.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1Y82
  • CSU: Contacts of Structural Units for 1Y82
  • Likely Quarternary Molecular Structure file(s) for 1Y82
  • Structure Factors (218 Kb)
  • Retrieve 1Y82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y82 from S2C, [Save to disk]
  • Re-refined 1y82 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Y82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y82
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y82, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y82_D] [1y82_A] [1y82] [1y82_C] [1y82_B]
  • SWISS-PROT database: [Q8U3V0]
  • Domain organization of [Q8U3V0_PYRFU] by SWISSPFAM
    • Other resources with information on 1Y82
  • Community annotation for 1Y82 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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