1Y8B Transferase date Dec 10, 2004
title Solution Nmr-Derived Global Fold Of Malate Synthase G From E
authors V.Tugarinov, W.Y.Choy, V.Y.Orekhov, L.E.Kay
compound source
Molecule: Malate Synthase G
Chain: A
Synonym: Msg
Ec: 2.3.3.9
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Glcb, Glc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28b
methodSolution NMR
ligand
enzyme Transferase E.C.2.3.3.9 BRENDA
related structures by homologous chain: 1D8C
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution NMR-derived global fold of a monomeric 82-kDa enzyme., Tugarinov V, Choy WY, Orekhov VY, Kay LE, Proc Natl Acad Sci U S A 2005 Jan 18;102(3):622-7. Epub 2005 Jan 06. PMID:15637152
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1897 Kb) [Save to disk]
  • Biological Unit Coordinates (1y8b.pdb1.gz) 186 Kb
  • CSU: Contacts of Structural Units for 1Y8B
  • Original NMR restraints for 1Y8B from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Y8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y8B from S2C, [Save to disk]
  • View 1Y8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y8B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y8B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1y8ba_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y8b] [1y8b_A]
  • SWISS-PROT database: [P37330]
  • Domain organization of [MASZ_ECOLI] by SWISSPFAM
  • Other resources with information on 1Y8B
  • Community annotation for 1Y8B at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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