1Y8G Signaling Protein,Transferase date Dec 12, 2004
title Catalytic And Ubiqutin-Associated Domains Of Mark2par-1: In Double Mutant With Selenomethionine
authors S.Panneerselvam, A.Marx, E.M.Mandelkow, E.Mandelkow
compound source
Molecule: Mapmicrotubule Affinity-Regulating Kinase 2
Chain: A, B
Fragment: Catalytic And Ubiquitin-Associated Domains, Resid 364;
Synonym: Par-1; Kin1; Serinethreonine Kinase Emk
Ec: 2.7.1.37
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Mark2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest17
symmetry Space Group: P 61
R_factor 0.198 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.822 118.822 105.380 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand MSE enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the catalytic and ubiquitin-associated domains of the protein kinase MARK/Par-1., Panneerselvam S, Marx A, Mandelkow EM, Mandelkow E, Structure. 2006 Feb;14(2):173-83. PMID:16472737
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (1y8g.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 1Y8G
  • CSU: Contacts of Structural Units for 1Y8G
  • Likely Quarternary Molecular Structure file(s) for 1Y8G
  • Structure Factors (218 Kb)
  • Retrieve 1Y8G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y8G from S2C, [Save to disk]
  • Re-refined 1y8g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y8G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y8G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y8G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y8g] [1y8g_B] [1y8g_A]
  • SWISS-PROT database: [O08679]
  • Domain organization of [MARK2_RAT] by SWISSPFAM
  • Domains found in 1Y8G: [S_TKc] [UBA ] by SMART
  • Other resources with information on 1Y8G
  • Community annotation for 1Y8G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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