1YB2 Structural Genomics, Unknown Function date Dec 18, 2004
title Structure Of A Putative Methyltransferase From Thermoplasma Acidophilum.
authors M.E.Cuff, X.Xu, A.Edwards, A.Savchenko, R.Sanishvili, A.Joachimia Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Ta0852
Chain: A
Engineered: Yes
 Organism_scientific: Thermoplasma Acidophilum
Organism_taxid: 273075
Strain: Dsm 1728
Gene: Ta0852
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.316 60.557 65.841 90.00 105.12 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • rRNA (adenine-N6,N6-)-dimeth...


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  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1yb2.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1YB2
  • CSU: Contacts of Structural Units for 1YB2
  • Likely Quarternary Molecular Structure file(s) for 1YB2
  • Structure Factors (267 Kb)
  • Retrieve 1YB2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YB2 from S2C, [Save to disk]
  • Re-refined 1yb2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 1YB2
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    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YB2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k1yb2, region B:385-659 [Jmol] [rasmolscript] [script source]
        - Domain d1g1yb2, region B:503-585 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yb2] [1yb2_A]
  • SWISS-PROT database: [Q9HJW1]
  • Domain organization of [Q9HJW1_THEAC] by SWISSPFAM
    • Other resources with information on 1YB2
  • Community annotation for 1YB2 at PDBWiki (http://pdbwiki.org)
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