1YBJ Metal Binding Protein date Dec 21, 2004
title Structural And Dynamics Studies Of Both Apo And Holo Forms O Hemophore Hasa
authors N.Wolff, N.Izadi-Pruneyre, J.Couprie, M.Habeck, J.Linge, W.Riepin C.Wandersman, M.Nilges, M.Delepierre, A.Lecroisey
compound source
Molecule: Hemophore Hasa
Chain: A
Synonym: Heme Acquisition System Protein A
Engineered: Yes
 Organism_scientific: Serratia Marcescens
Organism_taxid: 615
Gene: Hasa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pop3
Expression_system_vector_type: Pam238
Expression_system_plasmid: Psyc150
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComparative analysis of structural and dynamic properties of the loaded and unloaded hemophore HasA: functional implications., Wolff N, Izadi-Pruneyre N, Couprie J, Habeck M, Linge J, Rieping W, Wandersman C, Nilges M, Delepierre M, Lecroisey A, J Mol Biol. 2008 Feb 15;376(2):517-25. Epub 2007 Dec 4. PMID:18164722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (416 Kb) [Save to disk]
  • Biological Unit Coordinates (1ybj.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1YBJ
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YBJ from S2C, [Save to disk]
    • View 1YBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YBJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YBJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ybj] [1ybj_A]
  • SWISS-PROT database: [Q54450]
  • Belongs to the outer membrane receptor (omr) family according to TCDB.
  • Domain organization of [HASA_SERMA] by SWISSPFAM
    • Other resources with information on 1YBJ
  • Community annotation for 1YBJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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