1YCE Membrane Protein date Dec 22, 2004
title Structure Of The Rotor Ring Of F-Type Na+-Atpase From Ilyoba Tartaricus
authors T.Meier, P.Polzer, K.Diederichs, W.Welte, P.Dimroth
compound source
Molecule: Subunit C
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,
 Organism_scientific: Ilyobacter Tartaricus
Organism_taxid: 167644
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.700 140.000 153.000 90.00 118.40 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand F09, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, a, T, N, K, d, E, j, u, k, g, t, e, J, v, s, B, H, c, q, b, D, I, G, U, F, r, V, Q, M, h, C, L, f, i, A, n, O, P, m, l, p, R, o


Primary referenceStructure of the rotor ring of F-Type Na+-ATPase from Ilyobacter tartaricus., Meier T, Polzer P, Diederichs K, Welte W, Dimroth P, Science 2005 Apr 29;308(5722):659-62. PMID:15860619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (556 Kb) [Save to disk]
  • Biological Unit Coordinates (1yce.pdb1.gz) 139 Kb
  • Biological Unit Coordinates (1yce.pdb2.gz) 139 Kb
  • Biological Unit Coordinates (1yce.pdb3.gz) 141 Kb
  • Biological Unit Coordinates (1yce.pdb4.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 1YCE
  • CSU: Contacts of Structural Units for 1YCE
  • Likely Quarternary Molecular Structure file(s) for 1YCE
  • Structure Factors (1810 Kb)
  • Retrieve 1YCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YCE from S2C, [Save to disk]
  • Re-refined 1yce structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YCE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YCE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yce_M] [1yce_g] [1yce_p] [1yce_e] [1yce_H] [1yce_V] [1yce] [1yce_D] [1yce_B] [1yce_t] [1yce_P] [1yce_S] [1yce_b] [1yce_c] [1yce_j] [1yce_q] [1yce_r] [1yce_a] [1yce_A] [1yce_O] [1yce_i] [1yce_F] [1yce_K] [1yce_m] [1yce_C] [1yce_U] [1yce_I] [1yce_J] [1yce_h] [1yce_T] [1yce_E] [1yce_G] [1yce_k] [1yce_v] [1yce_o] [1yce_s] [1yce_R] [1yce_l] [1yce_n] [1yce_Q] [1yce_u] [1yce_d] [1yce_N] [1yce_f] [1yce_L]
  • SWISS-PROT database: [Q8KRV3]
  • Domain organization of [ATPL_ILYTA] by SWISSPFAM
    • Other resources with information on 1YCE
  • Community annotation for 1YCE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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