1YCN Metal Binding Protein date Dec 22, 2004
title X-Ray Structure Of Annexin From Arabidopsis Thaliana Gene At
authors G.E.Wesenberg, G.N.Phillips Jr., E.Bitto, C.A.Bingman, S.T.M.All Center For Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Putative Ca2+-Dependent Membrane-Binding Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: At1g35720
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 P(Rare2)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp-17
symmetry Space Group: C 2 2 21
R_factor 0.220 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.543 96.936 226.878 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.51 Å
related structures by homologous chain: 1DK5, 1N00
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1ycn.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (1ycn.pdb2.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1YCN
  • Likely Quarternary Molecular Structure file(s) for 1YCN
  • Structure Factors (507 Kb)
  • Retrieve 1YCN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YCN from S2C, [Save to disk]
  • Re-refined 1ycn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YCN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YCN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YCN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ycna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ycnb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ycn_A] [1ycn_B] [1ycn]
  • SWISS-PROT database: [Q9SYT0]
  • Domain organization of [ANXD1_ARATH] by SWISSPFAM
  • Domain found in 1YCN: [ANX ] by SMART
    • Other resources with information on 1YCN
  • Community annotation for 1YCN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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