1YDI	Cell Adhesion, Structural Protein	date	Dec 23, 2004
title	Human Vinculin Head Domain (Vh1, 1-258) In Complex With Huma Actinin'S Vinculin-Binding Site (Residues 731-760)
authors	T.Izard
compound		source
Molecule: Vinculin Isoform Vcl Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3
Molecule: Alpha-Actinin 4 Chain: B Synonym: Non-Muscle Alpha-Actinin 4, F-Actin Cross Linking Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Actn4 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.171 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.843 54.268 63.598 90.00 107.57 90.00
method	X-Ray Diffraction	resolution	1.80 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Dynamics of {alpha}-Actinin-Vinculin Interactions., Bois PR, Borgon RA, Vonrhein C, Izard T, Mol Cell Biol 2005 Jul;25(14):6112-22. PMID:15988023

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (1ydi.pdb1.gz) 54 Kb CSU: Contacts of Structural Units for 1YDI Likely Quarternary Molecular Structure file(s) for 1YDI Retrieve 1YDI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YDI from S2C, [Save to disk]

View 1YDI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YDI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YDI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ydi_B] [1ydi] [1ydi_A] SWISS-PROT database: [O43707] [P18206] Domain organization of [ACTN4_HUMAN] [VINC_HUMAN] by SWISSPFAM

Other resources with information on 1YDI

Community annotation for 1YDI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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