1YDT Complex (Phosphotransferase Inhibitor) date Jul 24, 1996
title Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)Ethyl]-5-Isoquinoline
authors R.A.Engh, A.Girod, V.Kinzel, R.Huber, D.Bossemeyer
compound source
Molecule: C-Amp-Dependent Protein Kinase
Chain: E
Fragment: Catalytic Subunit
Synonym: Capk, Pka C-Alpha
Ec: 2.7.1.37
Engineered: Yes
Other_details: Alpha Isoenzyme
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Kinase Inhibitor Peptide
Chain: I
Synonym: Pki, Pki-Alpha
Engineered: Yes

symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.580 76.280 80.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand IQB, SEP, TPO BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1Q62, 1STC
Gene
Ontology
ChainFunctionProcessComponent
E


Primary referenceCrystal structures of catalytic subunit of cAMP-dependent protein kinase in complex with isoquinolinesulfonyl protein kinase inhibitors H7, H8, and H89. Structural implications for selectivity., Engh RA, Girod A, Kinzel V, Huber R, Bossemeyer D, J Biol Chem 1996 Oct 18;271(42):26157-64. PMID:8824261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1ydt.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1YDT
  • CSU: Contacts of Structural Units for 1YDT
  • Likely Quarternary Molecular Structure file(s) for 1YDT
  • Structure Factors (194 Kb)
  • Retrieve 1YDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YDT from S2C, [Save to disk]
  • Re-refined 1ydt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YDT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YDT, from MSDmotif at EBI
  • Genome occurence of 1YDT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ydte_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ydt] [1ydt_E] [1ydt_I]
  • SWISS-PROT database: [P63249] [P00517]
  • Domain organization of [IPKA_RAT] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 1YDT: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 1YDT
  • Community annotation for 1YDT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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