1YGK	Transferase	date	Jan 05, 2005
title	Crystal Structure Of Pyridoxal Kinase In Complex With Roscov Derivatives
authors	L.Tang, M.H.Li, P.Cao, F.Wang, W.R.Chang, S.Bach, J.Reinhardt, Y. M.Koken, H.Galons, Y.Wan, N.Gray, L.Meijer, T.Jiang, D.C.Liang
compound		source
Molecule: Pyridoxal Kinase Chain: A Synonym: Pyridoxine Kinase Ec: 2.7.1.35		Organism_scientific: Ovis Aries Organism_common: Sheep Organism_taxid: 9940
symmetry	Space Group: P 31 2 1	R_factor 0.235 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.832 102.832 58.552 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	RRC	enzyme	Transferase E.C.2.7.1.35 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of pyridoxal kinase in complex with roscovitine and derivatives., Tang L, Li MH, Cao P, Wang F, Chang WR, Bach S, Reinhardt J, Ferandin Y, Galons H, Wan Y, Gray N, Meijer L, Jiang T, Liang DC, J Biol Chem 2005 Sep 2;280(35):31220-9. Epub 2005 Jun 28. PMID:15985434

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (1ygk.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 1YGK CSU: Contacts of Structural Units for 1YGK Likely Quarternary Molecular Structure file(s) for 1YGK Structure Factors (66 Kb) Retrieve 1YGK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YGK from S2C, [Save to disk] Re-refined 1ygk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YGK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YGK

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YGK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ygk] [1ygk_A] SWISS-PROT database: [P82197] Domain organization of [PDXK_SHEEP] by SWISSPFAM

Other resources with information on 1YGK

Community annotation for 1YGK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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