1YGR	Hydrolase	date	Jan 05, 2005
title	Crystal Structure Of The Tandem Phosphatase Domain Of Rptp C
authors	H.J.Nam, F.Poy, H.Saito, C.A.Frederick
compound		source
Molecule: Cd45 Protein Tyrosine Phosphatase Chain: A, B Fragment: Cytoplasmic Domain Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11
Molecule: T-Cell Receptor Cd3 Zeta Itam-1 Chain: C, D Fragment: Itam-1 (Residues 80-85; Sws:P20963) Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans.
symmetry	Space Group: P 1 21 1	R_factor 0.255 R_Free 0.312
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.010 59.700 160.530 90.00 99.53 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	MSE, PTR	enzyme
related structures	by homologous chain: 1YGU
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for the function and regulation of the receptor protein tyrosine phosphatase CD45., Nam HJ, Poy F, Saito H, Frederick CA, J Exp Med 2005 Feb 7;201(3):441-52. Epub 2005 Jan 31. PMID:15684325

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk] Biological Unit Coordinates (1ygr.pdb1.gz) 97 Kb Biological Unit Coordinates (1ygr.pdb2.gz) 95 Kb LPC: Ligand-Protein Contacts for 1YGR CSU: Contacts of Structural Units for 1YGR Likely Quarternary Molecular Structure file(s) for 1YGR Retrieve 1YGR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YGR from S2C, [Save to disk]

View 1YGR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YGR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YGR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ygr_D] [1ygr_C] [1ygr_A] [1ygr_B] [1ygr] SWISS-PROT database: [P20963] [P08575] Domain organization of [CD3Z_HUMAN] [PTPRC_HUMAN] by SWISSPFAM Domain found in 1YGR: [PTPc ] by SMART

Other resources with information on 1YGR

Community annotation for 1YGR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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