1YIL Hydrolase date Jan 12, 2005
title Structure Of Hen Egg White Lysozyme Soaked With Cu2- Xylylbicyclam
authors T.M.Hunter, I.W.Mcnae, X.Liang, J.Bella, S.Parsons, M.D.Walkinshaw, P.J.Sadler
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, Gal D Iv;
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.177 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.258 78.258 37.901 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CL, MM2, NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1GPQ, 1LMQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProtein recognition of macrocycles: binding of anti-HIV metallocyclams to lysozyme., Hunter TM, McNae IW, Liang X, Bella J, Parsons S, Walkinshaw MD, Sadler PJ, Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2288-92. Epub 2005 Feb 8. PMID:15701702
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1yil.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1YIL
  • CSU: Contacts of Structural Units for 1YIL
  • Likely Quarternary Molecular Structure file(s) for 1YIL
  • Structure Factors (240 Kb)
  • Retrieve 1YIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YIL from S2C, [Save to disk]
  • Re-refined 1yil structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YIL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YIL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yil] [1yil_A]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1YIL: [LYZ1 ] by SMART
  • Other resources with information on 1YIL
  • Community annotation for 1YIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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