1YIU Ligase date Jan 13, 2005
title Itch E3 Ubiquitin Ligase Ww3 Domain
authors A.Z.Shaw, P.Martin-Malpartida, B.Morales, F.Yraola, M.Royo, M.J.M
compound source
Molecule: Itchy E3 Ubiquitin Protein Ligase
Chain: A
Fragment: Ww3
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Itch E3 Ww3 Domain
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Primary referencePhosphorylation of either Ser16 or Thr30 does not disrupt the structure of the Itch E3 ubiquitin ligase third WW domain., Shaw AZ, Martin-Malpartida P, Morales B, Yraola F, Royo M, Macias MJ, Proteins 2005 Aug 15;60(3):558-60. PMID:15971201
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1yiu.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1YIU
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YIU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YIU from S2C, [Save to disk]
    • View 1YIU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YIU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YIU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yiu_A] [1yiu]
  • SWISS-PROT database: [Q8C863]
  • Domain organization of [ITCH_MOUSE] by SWISSPFAM
  • Domain found in 1YIU: [WW ] by SMART
    • Other resources with information on 1YIU
  • Community annotation for 1YIU at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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